P-values ≤0 05 were considered

P-values ≤0.05 were considered selleck compound statistically significant. Potential correlations were

analysed by Spearman’s rank correlation coefficient. sCD14-concentrations in BAL fluid were significantly elevated 18 and 42 h after allergen challenge, compared to the control segment at 10 min, 18 and 42 h, respectively, as well as to the segment 10 min after allergen provocation (Fig. 1). sCD14 levels reached baseline levels.162 h after allergen provocation. Peripheral blood samples were drawn as in Fig. 1. Median sCD14 concentrations in peripheral blood were 6709 ng/ml (range 9528) before SAP (n = 33) and 6985 ng/ml (range 15862) after SAP (n = 32). There was no statistically significant difference between sC14 values in peripheral blood before and 18, 42 or 162 h after allergen challenge (data not shown). PBMC-CD14+

of healthy subjects (n = 7) and patients with allergic asthma (n = 7) were stimulated with LPS (10 ng/ml), LTD4 (10−11 M) or a combination of LPS + LTD4 (10 ng/ml + 10−11 M), for 6, 12 and 24 h, and sCD14 levels in the supernatant were measured at the different time points. sCD14 levels increased significantly 24 h after stimulation with LTD4 in comparison to control, 6 and 12 h after stimulation (P < 0.02, Wilcoxon signed ranks test –Fig. 2). PBMC-CD14+ cells from healthy volunteers and buy IWR-1 patients with allergic asthma Sirolimus datasheet reacted similarly. Stimulation of PBMC-CD14+ cells with LPS leads to increased sCD14 levels but failed to reach statistical significance in comparison to control (Fig. 3). Similar results were seen when cells were stimulated with the combination of LPS and LTD4. Similarly, PBMC-CD14+ cells were stimulated with IL-17 (50 ng/ml), and supernatants were measured for sCD14 6, 12 and 24 h after stimulation (Fig. 4). However, sCD14 levels were not different to control. PBMC-CD14+ cells of two healthy volunteers and four patients with allergic asthma were stimulated

with LTD4 (Fig. 5) which lead to a significant increase in sCD14 levels (median 57.1 ng/ml, range 92.4) compared to control (median 43.2 ng/ml, range 73.0; P = 0.028, Wilcoxon signed ranks test). Addition of Montelukast to LTD4 stimulation resulted in reduced sCD14 levels after 24 h compared to LTD4 stimulation (median 38.1 ng/ml, range 93.5; P = 0.028, Wilcoxon signed ranks test). The soluble LPS ligand sCD14 has been shown in increased concentrations at 18 and 24 h after segmental allergen challenge in patients with allergic asthma [28, 29]. In this study, we were able to expand this with kinetic data showing a further, approximately, 10-fold increase in sCD14 concentrations 42 h after allergen challenge compared to control segments. Interestingly, sCD14 levels returned to baseline within 7 days after allergen challenge.

40,41,43 The indirect pathway is supported by observations that i

40,41,43 The indirect pathway is supported by observations that in many cases there is no evidence of a specific microbial antigen, and the iNKT cell response involves IFN-γ but not IL-4 production and appears to be completely dependent on costimulation by cytokines such as IL-12p70.41,45 However, because it is difficult to rule out the possibility that microbes for which no iNKT cell antigen has been identified nevertheless do contain cryptic antigens, while microbes

that do contain such antigens will also concurrently provide TLR-mediated stimulation that activates DC cytokine production, it is not clear that these two pathways are actually separate during most physiological infections. SB525334 in vitro For example, it has recently been shown that CD1d-mediated presentation of a lipo-peptido-phosphatidylinositol from Entamoeba histolytica is necessary for secretion of IFN-γ by iNKT cells, but that the response requires simultaneous TLR-induced IL-12 secretion.72 Similarly, in a mouse model of tuberculosis it has recently been shown that iNKT cells have a protective effect through recognition of infected macrophages, and that macrophage production of IL-12 and IL-18 is critical for this effect.73 It is not clear whether recognition of mycobacterial

antigens is required for the iNKT cell-mediated protection; however, a previous study has identified mycobacterial lipids that may serve as iNKT antigens.74 Thus, it seems likely that the two

Vemurafenib concentration pathways of iNKT cell activation are not mutually exclusive, and that they occur simultaneously in many systems. Notably, it is not yet clear whether either the direct or indirect pathways of iNKT cell activation during microbial infection result in the maturation of pro-inflammatory DCs, such MRIP as those that are observed after administration of α-GalCer. Induction of a pro-inflammatory DC phenotype was shown in one system to depend on the up-regulation of CD40L expression by iNKT cells as well as their secretion of cytokines such as IFN-γ, both of which are induced by a strong TCR stimulus.65 While self-antigen recognition in the presence of IL-12 and IL-18 is sufficient to induce iNKT cell IFN-γ secretion, the extent to which this form of stimulation also induces cell surface CD40L up-regulation remains unclear. Nevertheless, it is possible that, when combined with a TLR stimulus and IFN-γ, even weak CD40L stimulation from iNKT cells is sufficient to induce the maturation of pro-inflammatory DCs (Fig. 1b). Although mature DCs have the capability to potently activate naïve T cells, it is well established that immature DCs have tolerizing effects.75 Thus, by inducing maturation of immature DCs, iNKT cells may tend to promote pro-inflammatory responses simply by shifting the balance away from the more tolerizing stage of DC differentiation.

Seven of eight patients survived Aspergillus endocarditis when he

Seven of eight patients survived Aspergillus endocarditis when heart valve surgery was performed (valve replacement, resection of vegetations) while only 1/17 survived with conservative treatment alone. Interestingly, 74% of the patients included in this analysis had a history of recent surgery, 68% of which had heart surgery performed, suggesting recent heart surgery as a risk factor for Aspergillus contamination of the endocardium during surgery. Akt inhibitor Aspergillus pericarditis is rare and usually develops

from adjacent infected tissue, such as an expanding pulmonic Aspergillus focus, from spreading Aspergillus myocarditis or by surgical contamination. As published in a review evaluating 29 cases, Aspergillus infection of the pericardium was always the result of contiguous dissemination of the lung or myocardium.

In that review only four of the 29 reported patients survived the infection.[66] Diagnosis Depsipeptide price of Aspergillus pericarditis is challenging, which may be a reason for frequently delayed decision for surgery. Electrocardiogram and echocardiography are the investigations of choice. They may show signs of pericardial effusion or thickening of the pericardium. However, these investigations may also appear normal. Only in 10 of the 29 cases, the pericarditis was correctly diagnosed before death and in all of these 10 cases Aspergillus infection affecting other organs had already been diagnosed before. Rapid pericardiectomy and/or surgical drainage under systemic antifungal therapy is recommended to prevent cardiac-related death and to gain tissue for diagnostics. Pericardial tamponade, haemodynamic deterioration and cardiac arrest Non-specific serine/threonine protein kinase due to arrhythmia[66-68] contribute to the reported fatal outcome. In a study published in 2000 by Silva et al. [69], eight cases of culture proven Aspergillus infection of an aortic aneurysm – all without prior surgery – were

investigated. All eight patients received surgical intervention; however, only three patients survived. Interestingly the three patients, who survived received all a resection of the aneurysm with in situ graft replacement, whereas the five patients who died, only had smaller surgery like embolectomy, indicating that resection of the mycotic aneurysm is crucial for outcome. In most patients of that study, the suspected primary focus of Aspergillus infection was the lung, spreading via vascular invasion. Primary Aspergillus infection of the lung can lead to erosion of the tissue and building of aortobronchial fistula, presenting clinically with haemoptysis. In these cases, partial pneumectomy and resection of the affected vessels are necessary.[69, 70] Aspergillus aneurysms of the aorta have also been reported to be caused by prior surgical interventions, either during cardiac valve replacement or grafting of aortic dissection, resulting in major complication and life-threatening embolic events.

JNK activation by ER stress was dependent on the IRE1 kinase doma

JNK activation by ER stress was dependent on the IRE1 kinase domain [60]. In mouse embryonic fibroblasts, ER stress caused by thapsigargin, activated p38

MAPK and JNK in a PERK-dependent manner [64]. NF-κB lies inactive in the cytoplasm due to direct interaction with its inhibitor IκB. Once phosphorylated by IκB kinase (IKK), IκB is degraded and releases active selleck chemical NF-κB, which then translocates to the nucleus and induces transcription of several genes, including pro-inflammatory cytokines (reviewed by [65]). Activation of NF-κB by the UPR pathway occurs by at least two distinct mechanisms. Once activated by ER stress, the kinase domain of IRE1 interacts with TRAF2 and IKK, leading to degradation of IκB, activation of NF-κB, and TNF-α synthesis by several cell types [63]. Alternatively, PERK phosphorylates eIF2α, inhibiting IκB translation. As the half-life of IκB is much shorter than the one of NF-κB, an accumulation of free NF-κB occurs, followed by nuclear translocation and transcription activation [61, 62] (Fig. 2). The production of type I interferons (IFNs) also seems

to be mediated by the UPR pathway [66]. A synergic effect was observed when cells where stimulated with ER stressors and pattern recognition receptors (PRRs) agonists. Induction of IFN-β by ER stress was dependent on XBP-1 and the TRIF/IRF3 pathway, downstream to several PRRs such as TLR4 and MDA5 [66]. In accordance to this, a cis-enhancer region that interacts with XBP-1s STA-9090 mouse was found 6.1 kb downstream IFNB1, which codes for IFN-β. One plausible explanation is that after LPS stimulation and consequent ER stress, eltoprazine XBP-1s binds to this enhancer and recruits IRF3 and CBP. Through a chromatin loop, these factors are brought closer to the IFNB1 promoter region, resulting in more efficient transcription machinery recruitment [67]. ER stress also plays an important role on acute phase responses [68]. CREBH is a liver specific transcription factor

activated upon ER stress. CREBH is found anchored in ER membrane and, once activated, it translocates to the Golgi complex. Proteolytic cleavage by S1P and S2P releases an active N-terminal fragment that translocates to the nucleus, where together with ATF6, regulates transcription of acute phase genes coding for proteins such as C-reactive protein and serum amyloid P component. Although CREBH does not contribute directly to the activation or regulation of the UPR pathway, it is activated by ER stress and is necessary for acute phase response [68]. Recently, it was shown that TLR signalling activates the IRE1/XBP-1 axis and that this loop is crucial for host defense [69]. TLRs are well-conserved receptors that recognize pathogen-associated molecular patterns and danger signals (reviewed by [70]).

We have shown in several animal experiments that a powerful prede

We have shown in several animal experiments that a powerful predetermined immune response can be achieved by the MVT without the use of adjuvants (e.g. downregulation/termination of a pathogenic IgG aab–driven experimental autoimmune kidney Y-27632 order disease) to regain tolerance to self [44, 52, 74]. The MVT provides a specific immune response, provided the individual components used in the vaccine are prepared in pure form. It may be noted that IC preparations have been used in the past but not as in the MVT; in other words, the application of IC per se is not new. For example, IC have been tested at various ag:ab ratios to investigate immune responses against exogenous

ag [79–87], and have also been used in a vaccination technique to enhance ab response [88–90]. However, it is well known that neither of such techniques is designed to correct anomalies associated with autoimmune disorders; they only have abilities to increase ab production just like adjuvants through a more efficient ag presentation [91]. Indeed, the approach by which IC are employed in the

MVT to correct harmful immune responses is a novel one. The MVT uses the immune system’s natural abilities to correct mishaps. That is to say, it is able to evoke a corrective immune www.selleckchem.com/products/ldk378.html response when the ‘right information’ is transmitted to its effector cells. To achieve a predetermined beneficial immune response outcome (i.e. prevention or cure of chronic disorders) through the application of the MVT, the aetiology and pathogenesis of the ailment must be fully understood, in order to be able to produce and assemble IC that will initiate a secondary immune response-like reaction in the injected host producing the same ab (the corrective immune

response) with the same specificity against the target ag as resides in the inoculum. The MVT is the missing Bacterial neuraminidase link in vaccination technology, in its ability to re-establish normalcy through ab information transfer, whether by downregulating (as in autoimmune diseases) or upregulating (as in cancer) pathogenic immune responses. So far the MVT has been employed in autoimmune disease and cancer experiments in animals, achieving successful corrective immune response outcomes in both. As the MVT’s ability to provoke predetermined immune responses is grounded in basic immunological principles, it can be expected that its application in humans will produce the same corrective immune response outcomes as observed in experimental animals. The MVT promises to provide the long awaited answer for prevention and cure of autoimmune disorders [92]. We acknowledge the assistance of our research associate, Zoltan B. Kovacs, in computer and laboratory-related work.

, 2007) OD values were evaluated at 490 nm by a plate reader (Sy

, 2007). OD values were evaluated at 490 nm by a plate reader (Synergy HT, Bio-TEK). Data were expressed as the stimulation index, calculated

as the mean reading of triplicate wells stimulated with antigen divided by the mean reading of triplicate wells stimulated with medium. Intracellular cytokine staining was performed as previously described (Wang et al., 2008). Briefly, single T-cell suspension from each group at 1 × 106 cells/100 μL was stimulated in a 96-well plate with HBsAg (5 μg mL−1) for 6 h, and treated with monensin (2 μg mL−1, eBioscience, San Diego, CA) for the last 4 h. Cells were blocked with Fc-Block (BD Phamingen, San Diego) for 30 min. Cells

were fixed with 4% paraformaldehyde for 15 min before permeabilization with 0.1% saponin for 10 min. The cells Wnt pathway were stained with isotype controls, or double stained with anti-CD8-PE plus anti-IFN-γ-FITC, anti-CD4-PE and anti-IFN-γ-FITC, anti-CD4-PE plus anti-IL-2-FITC, or anti-CD4-FITC plus anti-IL-4-PE for 30 min. The cells were detected by a FACS Calibur and analysed using cellquest pro Software (BD Bioscience). The frequency of CD4+CD25+Foxp3+ Treg cells was tested with the mouse regulatory T-cell staining kit according the manufacturer’s instructions (eBioscience). An in vivo cytotoxicity assay was performed as described previously (Zou et al., 2010). Single suspension cells from check details naive BALB/c mice were split equally into two portions. One portion as the target cell was labeled with 5 μM CFSE carboxyfluorescein mafosfamide diacetate, succinimidyl ester (Fan-bo biochemiscals, Beijing,

China; CFSEhigh) after being pulsed with the CTL peptide S208-215 (50 μg mL−1) for 4 h. The other portion as a nontarget control and was labeled only with 0.5 μM CFSE (CFSElow). The two portions were mixed in a 1:1 ratio and injected into immunized mice at 2 × 107 total cells per mouse via the tail vein on day 7 after the second immunization. Splenocytes were isolated 4 h later and the CFSE-labeled cells were tested by a FACS Calibur analyser based on their different CFSE fluorescence intensities. Specific lysis was calculated according to: % specific lysis = [1 – (% specific peptide-loaded target cells/% control peptide-loaded target cells)] × 100%. Total RNA was extracted from splenocytes of immunized mice with Trizol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions. cDNA was synthesized using Ace reverse transcriptase (Toyobo Co. Ltd, Pudong, Shanghai) with Oligo (dT) 18 primers (the primers for PCR are listed in Table 1). PCR products were resolved on 1.5% agarose gels and visualized by ethidium bromide staining under UV light.

1B) In addition the CD4 and CD8 status of the iNKT cells was inv

1B). In addition the CD4 and CD8 status of the iNKT cells was investigated and there was no difference between the groups (Fig. 1C). It has previously been reported that the expression of CD1d on peripheral blood monocytes is increased in Gaucher disease and this was suggested to be due to lysosomal glycosphingolipid storage [20]. We analysed the expression of CD1d on monocytes (CD14+) and B cells (CD19+) (gating strategy, Supporting Information Fig. 2) and found no differences between the groups (Fig. 2) suggesting that in NPC1 patients and heterozygote carriers there is no alteration in cell surface CD1d expression. In

order to test the function of iNKT cells derived from NPC1 patients we generated iNKT cells lines from three patients that were co-cultured with human CD1d expressing THP1 cells that had been pulsed with three different exogenous antigens or treated with the

TLR 7/8 ligand mTOR inhibitor NVP-BEZ235 price R848 [22]. The response of the iNKT cells was determined by measuring IFN-γ, IL-4 and GM-CSF production in the supernatant. The three NPC1 iNKT-cell lines responded to both exogenous and endogenous ligands and produced comparable levels of the cytokines compared to a control iNKT-cell line (Fig. 3A). Finally, we investigated the ability of antigen presenting cells derived from NPC1 patients and heterozygotes to stimulate iNKT-cell lines by generating EBV transformed B-cell lines. Once established these B-cell lines down-regulated endogenous CD1d, and we therefore transduced them with a lentiviral human or mouse CD1d construct before use in antigen presentation assays. Expression of human or mouse CD1d was comparable between NPC1 and heterozygote EBV-B-cell lines but slightly lower than that of C1R, an EBV-B-cell line used

as a control (Supporting Information Fig. 3). Using the intensity of Ribose-5-phosphate isomerase LysoTracker green staining, which accumulates in acidic intracellular vesicles, as a measure of lysosomal storage, we confirmed that the enhanced lysosomal storage characteristic of NPC1 peripheral blood B cells [23] was retained in the NPC1 EBV-B-cell lines (Fig. 3D). We used three different iNKT-cell ligands that have been reported to require different conditions for loading onto CD1d. αGalCer loading has been reported to require access to a functional lysosomal compartment [9], Gal(α1-2)GalCer requires cleavage of the terminal galactose residue by lysosomal α-galactosidase before it can stimulate iNKT cells [15] and C20:2 can be loaded at the cell surface [24]. We found all three iNKT-cell ligands could be presented by the NPC1 and heterozygote EBV-B-cell lines transduced with human CD1d and resulted in similar or greater iNKT-cell activation compared with control C1R cells as determined by IFN-γ in the supernatant (Fig. 3B).

In contrast to the defective responses to IL-6, the inhibitory ef

In contrast to the defective responses to IL-6, the inhibitory effects of IL-10 on IL-17 production were similar in healthy volunteers or HIES patients, suggesting that STAT3 is redundant for IL-10 signalling leading to reduced IL-17 production. In conclusion, the present study demonstrates that patients with HIES have differential defects in IL-17 responses to the two main pathogens associated with the disease, S. aureus and C. albicans, and this is comparable with the clinical features

of this syndrome. In addition, the extent of the Th17 defect is due to the location of the STAT3 mutation, and is associated with the clinical phenotype in these patients. Furthermore, defective Th17 responses are a more sensitive marker of the disease in HIES patients than STAT3 mutations. M. G. N. was supported by a Vidi Grant of the Netherlands Organization for Scientific Research. These studies were supported by donations selleck chemical collected by one of the HIES patients. None declared. “
“The detection and identification of bacteria present in natural and industrial ecosystems is now entirely based on molecular systems that detect microbial RNA or DNA. Culture methods were abandoned, in the 1980s, because direct observations showed that <1% of the bacteria in these

systems grew on laboratory media. Culture methods comprise the backbone of the Food and Drug Administration-approved diagnostic systems used in hospital laboratories, with some molecular methods Selleck BIBW2992 being approved for the detection of specific pathogens that are difficult to grow in vitro. In several medical specialties, the reaction to negative cultures in cases in which overt signs of infection clearly exist has produced a spreading skepticism concerning the sensitivity and accuracy of traditional culture methods. We summarize evidence from the field of orthopedic surgery, and from other medical specialties, that support the contention that culture techniques are

especially insensitive and inaccurate in the detection of chronic biofilm infections. We examine the plethora of molecular techniques Benzatropine that could replace cultures in the diagnosis of bacterial diseases, and we identify the new Ibis technique that is based on base ratios (not base sequences), as the molecular system most likely to fulfill the requirements of routine diagnosis in orthopedic surgery. Biofilm infections were defined by Costertonet al. (1999), in a review in science, and were seen to encompass all device-related infections and a significant proportion of other chronic bacterial diseases. The characterization of an infection as being a biofilm infection is universally based on the unequivocal demonstration, by direct microscopy, of matrix-enclosed microbial communities within or upon the affected tissues or prostheses (Stoodleyet al., 2002).

Neurogenic urinary retention in SCA31 can be listed in the clinic

Neurogenic urinary retention in SCA31 can be listed in the clinical

differential GPCR Compound Library cell line diagnosis of cerebellar ataxia. However, possible outflow obstruction in men should always be explored. Clinical differential diagnosis of degenerative cerebellar ataxia is still a challenge for neurologists. Most cases are sporadic, and the cerebellar form of multiple system atrophy (MSA-C) is the most common in Asian countries.[1] MSA-C appears as a combination of cerebellar ataxia and prominent autonomic dysfunction including syncope, urinary retention and sleep apnea.[1] Autosomal-dominant cerebellar ataxias (ADCA) are rare causes of cerebellar ataxia. The most common genetically determined ADCAs worldwide are spinocerebellar ataxia type 3 (SCA3, also called Machado-Joseph disease) and SCA6. As compared with MSA-C, autonomic dysfunction Selleckchem Trichostatin A is not common in SCA3 and SCA6, whereas moderate urinary dysfunction does occur in both forms.[2, 3] In Japan, where it was initially described, SCA31 represents the third most common ADCA;[4] it is also known to occur in Caucasians.[5] SCA31 is caused by large insertions of pentanucleotide repeats ((TGGAA)n) into the genes coding for thymidine kinase

2 (TK2) and BEAN, or brain-expressed protein associated with NEDD4 (neural precursor cell-expressed developmentally down-regulated protein 4).[4] Clinically, SCA31 presents with a relatively pure cerebellar phenotype, including ataxia,

dysarthria, oculomotor impairments and variable hearing loss. Onset is usually in late adulthood. Brain magnetic resonance imaging (MRI) shows cerebellar atrophy.[4, 6] Post-mortem studies of SCA31 reveal atrophy and loss of cerebellar Purkinje cells, surrounded by amorphous materials that are positive for synaptophysin, ubiquitin and calbindin.[4, 6] Autonomic dysfunction has not been well known and no urodynamic data are available in SCA31. Recently, we had a case of a man with SCA31 who, after a 5-year history of cerebellar ataxia and positional dizziness, Sitaxentan developed partial urinary retention. A 73-year-old man with a 5-year history of staggering gait, dysarthria and positional dizziness developed mild urinary frequency and voiding difficulty. His father and a sister also had cerebellar ataxia. His father was born in Nagano prefecture, which is a common site of SCA31 in Japan. His sister was diagnosed with SCA31 through the detection of large insertions of TGGAA pentanucleotide repeats. He was admitted to the emergency department of our hospital because of fever and dehydration due to bronchopneumonia. On referral to our neurology department, he displayed cerebellar ataxia in eye movement, speech, limbs and gait. Visual suppression of caloric nystagmus was reduced, which indicated dysfunction in the vestibulocerebellum.[7] He had sensorineural hearing loss for high tones. His swallowing function was normal.

Dried specimens are mounted on a SEM stub with double-sided tape

Dried specimens are mounted on a SEM stub with double-sided tape and covered with a thin layer of gold with a sputter coater. The fractured surfaces of the kidney are viewed on a scanning electron microscope. Fractures tend to follow voids and weakness in the frozen tissue and should reveal primary cilia within the tubule (Fig. 2), duct and Bowman’s capsule. In the healthy adult kidney primary cilia are often obscured

within the proximal tubule brush border. Segments of the collecting duct are recognizable by the presence of intercalated cells which do not bear a primary cilium.[11] SEM can also be used to examine apical primary cilia on Ixazomib cultured cells as described above, but without the need for cryoprotection and freeze fracture. Fluorescence microscopy is the technique of choice for most studies of renal primary cilia. An advantage of this approach is the availability of antibodies (Table 1). Transgenic cell lines have also been used to study the dynamics of ciliary components in cultured renal cells

as described elsewhere.[27] Sample preparation protocols for fluorescence microscopy vary depending Obeticholic Acid ic50 on the nature of the specimen (cultured cells or kidney section), the antibodies being used and the antigens being localized. Clone 6-11B-1 Cat no. T6793 Antibody N-18 Cat no. sc-49459 Santa Cruz Biotechnology Rodent kidneys are prepared for immunofluorescence by fixing in 4% formaldehyde

in PBS. Best preservation is achieved by initially perfusion fixing using the procedure described for electron microscopy, Lepirudin then immersion fixing of pieces of kidney for 2–5 h at room temperature. Human kidney samples can be immersion fixed with 4% formaldehyde, although renal biopsy samples are often fixed with formalin for pathology which is also acceptable for cilium immunostaining. Glutaraldehyde is generally avoided for tissue destined for fluorescence microscopy as it increases autofluorescence, particularly of tubules in the kidney. For sectioning, fixed kidney is embedded in paraffin or frozen. Paraffin sections cut at approximately 6 microns are baked at 60°C for 1 h, dewaxed in xylene and rehydrated through decreasing ethanol concentrations, water and then PBS. Paraffin-embedded samples require antigen retrieval by proteinase K digestion (20 μg/mL in TE for 10 min at 37°C) or boiling in citrate buffer (10 mM sodium citrate, pH 6). In our experience, boiling citrate buffer gives clearer cilium labelling in the kidney using anti-acetylated alpha-tubulin, and also works well for human renal biopsy samples fixed in formalin and embedded in paraffin[5] (Fig. 3a). However, antigen retrieval methods can be varied to optimize the detection of other antigens with respect to primary cilia.